Docs

Documentation

Step-by-step guides to Honeychrome, from installing the app to unmixing, gating and exporting your data.

Get started

Install Honeychrome and learn your way around.

Unmixing

Build a spectral model, clean controls and remove autofluorescence.

Plots and gating

Plots, transforms, gates and per-sample gates.

Statistics

Compare samples and groups of samples.

Outputs

Write reports and export plots and FCS files.

Acquisition

Run a Cytkit cytometer from Honeychrome.

Reference

Long jobs, privacy and other details.

Developers

Extend Honeychrome with Python plugins.

Every page of the app also has a Show Help button that explains each setting on that page, with references.